Cheap Flights to Japan

Compare El Nido to Tokyo flight deals

Find the cheapest month or even day of the year to fly to Tokyo

Book the best Tokyo fare with no extra fees

Flight deals from El Nido to Tokyo

Looking for a cheap last-minute deal or the best round-trip flight from El Nido to Tokyo? Find the lowest prices on one-way and round-trip tickets right here.

Tokyo.$417 per passenger.Departing Thu, Oct 2, returning Sun, Oct 19.Round-trip flight with Air Swift and Philippines AirAsia.Outbound indirect flight with Air Swift, departing from El Nido on Thu, Oct 2, arriving in Tokyo Narita.Inbound indirect flight with Philippines AirAsia, departing from Tokyo Narita on Sun, Oct 19, arriving in El Nido.Price includes taxes and charges.From $417, select.

Tokyo.$485 per passenger.Departing Thu, Nov 13, returning Thu, Nov 27.Round-trip flight with Air Swift and Cebu Pacific.Outbound indirect flight with Air Swift, departing from El Nido on Thu, Nov 13, arriving in Tokyo Narita.Inbound indirect flight with Cebu Pacific, departing from Tokyo Narita on Thu, Nov 27, arriving in El Nido.Price includes taxes and charges.From $485, select.

Tokyo.$626 per passenger.Departing Sat, Mar 1, returning Sat, Mar 8.Round-trip flight with Air Swift and Jetstar.Outbound indirect flight with Air Swift, departing from El Nido on Sat, Mar 1, arriving in Tokyo Haneda.Inbound indirect flight with Jetstar, departing from Tokyo Narita on Sat, Mar 8, arriving in El Nido.Price includes taxes and charges.From $626, select.

Tokyo.$695 per passenger.Departing Fri, Feb 28, returning Fri, Mar 7.Round-trip flight with Air Swift and Jetstar.Outbound indirect flight with Air Swift, departing from El Nido on Fri, Feb 28, arriving in Tokyo Haneda.Inbound indirect flight with Jetstar, departing from Tokyo Narita on Fri, Mar 7, arriving in El Nido.Price includes taxes and charges.From $695, select.

Find the cheapest month to fly from El Nido to Tokyo

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like El Nido to Tokyo flights are currently cheapest in October.

Feb

Mar

Apr

May

Jun

Jul

Aug

Sep

Oct

Nov

Dec

Jan

Alternative El Nido to Tokyo routes

Looking for the cheapest, fastest or easiest route from El Nido to Tokyo? You could fly into the following airports instead.

El Nido to Tokyo: Flight information

The things to know before you go.

Cheapest flight found	$417
Cheapest month to fly	October

Finding cheap flights from El Nido to Tokyo: Frequently asked questions

How many airports are there in Tokyo?

There are 3 airports in Tokyo: Tokyo Haneda, Tokyo Narita and Omitama.

How much are round-trip flights from El Nido to Tokyo?

The best price we found for a round-trip flight from El Nido to Tokyo is $417. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.

Which airlines fly direct from El Nido to Tokyo?

Currently, there are no airlines that fly direct from El Nido to Tokyo. But we found flights with one or more stops from $419.

How many flights are there a week from El Nido to Tokyo?

There are no flights flying from El Nido to Tokyo, as of February 2025.

When is the cheapest time to fly from El Nido to Tokyo?

The cheapest month to fly from El Nido to Tokyo is usually February 2025.

What's the cheapest airport to fly to in Tokyo?

If you're flying from El Nido Airport, the cheapest airport near Tokyo is Tokyo Narita – which is 63.7 km away from the center of Tokyo. We've found flights to this airport from $417.

Which upcoming date is cheapest to fly from El Nido Airport to Tokyo on?

After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from El Nido Airport to Tokyo on Thursday, October 2, 2025.

Can I get a direct flight from El Nido Airport to Tokyo?

No airlines currently offer direct flights between El Nido Airport and Tokyo. Most routes have one or more stops.

How can I get the best flight deal from El Nido Airport to Tokyo?

We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Tokyo but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

When is the best time to book flights to Tokyo?

We crunched all the numbers in our flight calendar, and it looks like the cheapest time to book a flight to Tokyo is around 40 days in advance, so don’t leave your flight to the last minute.

What’s the weather like in Tokyo?

In February, the average temperature is usually around 16°C. August is typically the warmest month in Tokyo, when it usually averages around 28°C. You can expect the least rain in February. The coldest month is February, with temperatures averaging 15°C. The rainiest month is May.

Which is the cheapest airline to fly with from El Nido Airport to Tokyo?

Currently, Air Swift offers the cheapest flight tickets to Tokyo.

Traveling from El Nido Airport (ENI) to Tokyo: what you need to know

The timezone in Tokyo is UTC+9. The city is 1 hour ahead of El Nido, where El Nido Airport is located.
Give yourself enough time to make your flight from ENI to Tokyo. A good rule of thumb is to arrive at least two hours before international departures and an hour ahead for domestic flights.
Be prepared for longer queues in popular months such as May and other peak periods. Arriving up to fours hours ahead of international flights and two hours for domestic departures is a good idea.
If you have a passport from Philippines, you will need an embassy visa to enter Japan. This applies when booking a cheap ticket from El Nido Airport to Tokyo for tourism purposes. Requirements may change if you're traveling for business or other reasons. Always check the visa rules ahead of booking and definitely before flying.
The journey from central El Nido to ENI takes approximately 15 minutes on public transport. If you drive, ride-share or get a cab, you'll cover the 2 kilometers in 3 minutes or so, depending on traffic conditions.
Booked an early flight from El Nido Airport to Tokyo? Avoid the last-minute rush to the airport (and sneak in some extra snooze time) by picking one of these hotels close to ENI:

How to find the cheapest flights from El Nido Airport (ENI) to Tokyo

$108 is the lowest price for a one-way ticket from El Nido Airport to Tokyo. Return flights start from $419. These prices can change based on availability and demand.
Don't leave everything to the last minute. You're more likely to get cheap tickets from ENI to Tokyo if you book early. Airlines often offer some great early bird discounts.
Getting cheap tickets from El Nido Airport to Tokyo is easy if you can be flexible with your trip dates. Try using the 'Whole month' search function to see the best prices across every month and snap up a great deal.
Locking in a cheap ticket from ENI to Tokyo is a piece of cake with Price Alerts. Simply create one of these automatic alerts and we'll notify you as soon as there's a better deal.
Tailor your trip with filters. Choose your preferred departure and arrival times, total journey duration and airlines. You can also sort the results by 'Cheapest,' 'Fastest' or 'Best' flights from El Nido Airport to Tokyo.

Airports in Tokyo

Haneda Airport (HND)

Haneda Airport (HND) is around 16 kilometers from central Tokyo. With your own car rental or in a cab, the drive is about 16 minutes.
The last thing you want is a lengthy journey to your hotel if you're getting in late on a flight from El Nido Airport to Tokyo. Check in to one of these accommodation options near HND instead:

Narita International Airport (NRT)

After your flight from El Nido Airport to Tokyo has landed, you can make your way to the city center in around 58 minutes by car. Central Tokyo is roughly 64 kilometers from Narita International Airport (NRT).
After your flight from ENI to Tokyo, tuck yourself in at a hotel near NRT. These are some comfortable accommodation options that'll help you get into relaxation mode:

Best time to go to Tokyo

June is the most popular month for flights from El Nido Airport to Tokyo. To steer clear of the crowds, head to Tokyo in February when things are quieter.
The warmest month in Tokyo is August, with the temperature ranging between 26ºC and 29ºC. Lock in your flights from El Nido Airport to Tokyo in this month if this is the type of weather you enjoy.
If you'd rather travel in cooler conditions, look for a cheap flight from ENI to Tokyo in February when temperatures average between 15ºC and 20ºC.

More about Tokyo

When it comes to looking for somewhere to lay your head, you'll find the best places to stay in Tokyo right here. Explore these hotels as soon as you've locked in your flight from El Nido Airport to Tokyo:
Tokyo Tower and Senso-ji Temple Yogodo are just a couple of the big attractions to add to your Tokyo itinerary. Keep the adventure rolling by checking out Mag's Park Rooftop Shibuya Crossing.

Complete your Tokyo trip with a car rental

We use the same magic that helped you find your cheap flight from El Nido Airport to Tokyo to track down deals on car rentals. Search for your ride in seconds and compare your options in one place. Plus we give you all the info on car rentals in Tokyo, from the most popular car type to the average daily price.